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Chapters: Seismic Unix, Insight Segmentation and Registration Toolkit, List of free geophysics software, Berkeley Open Infrastructure for Network Computing, Montage Image Mosaic Software, 3DSlicer, Bioconductor, General Architecture for Text Engineering, GIMIAS, Coot, UGENE, Weka, ImageJ, EAS3, JHepWork, ROOT, Experix, VTK, ANUGA Hydro, Visualization Library, Systems Biology Ontology, LabKey Server, NumPy, BioModels Database, Perl Data Language, Jmol, DAVID, MDynaMix, List of free geology software, Madagascar, Gene Designer, Chemistry Development Kit, GenMAPP, Citcom, Rmetrics, OpenFOAM, HMMER, ILNumerics.Net, NWChem, Geant4, Octopus, Spatiotemporal Epidemiological Modeler, EMBOSS, SciPy, IT++, OsiriX, RasMol, Lumi, Phyloscan, PyMOL, GTKWave, GumTree, DataScene, Olex2, Marble, Emergent, Code Saturne, OpenOpt, Armadillo, InVesalius, MAGMA, Vector NTI, Visual Molecular Dynamics, OpenBabel, Kalypso, Physics Analysis Workstation, FuncDesigner, BRP-PACU, Moscito, JOELib, Avogadro, Ptolemy Project, Elmer FEM solver, Analysis of Functional NeuroImages, XDrawChem, Impact Finite Element Program, LAMMPS, EXMARaLDA, Blue Obelisk, RQDA, Keel, NAMD, OpenMS, Ghemical, Image SXM, Molekel, SimPy, Fityk, The OpenMS Proteomics Pipeline, Kalzium, QuteMol, Gnaural, MicroDicom, Clone manager, Biskit, Trans-Proteomic Pipeline, GarlicSim, NoeClone, JChemPaint, ScientificPython, GENtle, EXCITING, Gravit, Mimee, XMD, ViewMol3D, Chemtool, Calypso Ichthyological Database, Pwpaw, Archaeological Recording Kit, PyEphem, Cn3D, PWscf, Uniform Sequence Address.
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Please note that the content of this book primarily consists of articles available from Wikipedia or other free sources online.
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